Panicle per Plant
GWAS analysis of related SNP information for panicle per plant in 115 rice accesssions
| QTL | Chr | Start | End | Sig_SNP_number | Peak_SNP | P-value | -log10(P) | Known genes |
|---|---|---|---|---|---|---|---|---|
| qPPP9 | chr09 | 11617592 | 14572635 | 3 | 14572635 | 1.06715E-09 | 8.97 | OsTB2(LOC_Os09g24480)(Lyu 2020) |
Manhattan Plot of Panicle per Plant(GLM_CovTopFivePCA Model)
QQ Plot of Last Panicle per Plant(GLM_CovTopFivePCA Model)
| QTL | Chr | Start | End | Sig_SNP_number | Peak_SNP | P-value | -log10(P) | Known genes |
|---|---|---|---|---|---|---|---|---|
| qPPP10 | chr10 | 12925354 | 13325354 | 1 | 13125354 | 1.02000E-07 | 6.99 | NA |
Manhattan Plot of Panicle per Plant(emmax-CovKinship Model)
QQ Plot of Last Panicle per Plant(emmax-CovKinship Model)
Reference
Lyu J, et al. Neo-functionalization of a homologue mediates adaptations of upland rice. Nat Commun 11,725 (2020).