Panicle Length

GWAS analysis of related SNP information for panicle length in 115 rice accesssions

QTL Chr Start End Sig_SNP_number Peak_SNP P-value -log10(P)
qPL1 chr01 40890615 41290615 1 41090615 1.98E-07 6.70
qPL3 chr03 14327071 14449173 3 14327071 1.7558E-08 7.76
qPL4-1 chr04 4556398 4956398 1 4756398 1.25488E-07 6.90
qPL4-2 chr04 32047542 32447542 1 32247542 8.93196E-09 8.05
project

Manhattan Plot of Panicle Length

project

QQ Plot of Panicle Length

Panicle Length

GWAS analysis of related SNP information for panicle length in other rice accesssions

ID A SE P-Value D SE P-value h^2(a) h^2(d)
Chr1-5510350-5535692 0.2864 0.0461 5.32E-10 --- --- --- 0.0175 ---
Chr1-20054706-20059582 0.1074 0.0518 3.81E-02 -0.2685 0.0509 1.32E-07 0.0025 0.0077
Chr1-39315616-43201828 0.5405 0.047 1.46E-30 --- --- --- 0.0623 ---
Chr2-5554654-5650410 -0.2087 0.0529 8.02E-05 --- --- --- 0.0093 ---
Chr2-20283991-20420828 -0.2065 0.0515 6.07E-05 --- --- --- 0.0091 ---
Chr2-33403235-33440643 0.2954 0.0506 5.40E-09 --- --- --- 0.0186 ---
Chr3-22204599-22283352 -0.4137 0.0488 2.50E-17 --- --- --- 0.0365 ---
Chr3-24552138-24611521 --- --- --- 0.2055 0.052 7.80E-05 --- 0.0045
Chr3-27887401-27944028 0.204 0.0525 1.01E-04 0.107 0.0503 3.33E-02 0.0089 0.0012
Chr4-19211611-19218909 0.3687 0.05 1.69E-13 --- --- --- 0.029 ---
Chr5-649060-661441 -0.1693 0.0509 8.73E-04 -0.103 0.0518 4.69E-02 0.0061 0.0011
Chr5-17594840-18118031 0.3231 0.053 1.07E-09 --- --- --- 0.0223 ---
Chr5-23696249-23734768 0.2097 0.0531 7.82E-05 --- --- --- 0.0094 ---
Chr5-26344560-26371220 0.4604 0.0494 1.32E-20 --- --- --- 0.0452 ---
Chr6-4777454-4813307 -0.3995 0.0535 8.34E-14 -0.1329 0.0494 7.14E-03 0.034 0.0019
Chr6-5688883-6740739 0.3367 0.053 2.20E-10 0.2221 0.0498 8.19E-06 0.0242 0.0053
Chr6-9660853-10010146 0.2888 0.0496 5.90E-09 --- --- --- 0.0178 ---
Chr6-16754327-16806054 0.2202 0.049 7.17E-06 --- --- --- 0.0103 ---
Chr6-25653684-25657376 -0.2789 0.0521 8.89E-08 -0.1227 0.0506 1.53E-02 0.0166 0.0016
Chr6-28607084-28632979 --- --- --- 0.2456 0.0535 4.43E-06 --- 0.0064
Chr7-28631301-28663660 0.206 0.0477 1.58E-05 0.1141 0.0559 4.14E-02 0.009 0.0014
Chr8-24834539-25271327 0.1961 0.0509 1.16E-04 0.1103 0.0518 3.33E-02 0.0082 0.0013
Chr9-13910718-13920635 -0.6009 0.0499 2.99E-33 0.1865 0.0528 4.19E-04 0.077 0.0037
Chr9-19506914-19575666 0.5137 0.0527 2.24E-22 -0.1908 0.05 1.37E-04 0.0562 0.0039
Chr9-21670016-21710210 -0.3782 0.0517 2.65E-13 0.1722 0.051 7.31E-04 0.0305 0.0032
Chr10-13030930-13067386 -0.2711 0.0525 2.46E-07 --- --- --- 0.0157 ---
Chr10-18391653-18507700 -0.3857 0.0485 1.82E-15 --- --- --- 0.0317 ---