Spikelets per Panicle
GWAS analysis of related SNP information for spikelets per panicle in 115 rice accesssions
| QTL | Chr | Start | End | Sig_SNP_number | Peak_SNP | P-value | -log10(P) |
|---|---|---|---|---|---|---|---|
| qSPP1-1 | chr01 | 1091739 | 1142068 | 11 | 1137978 | 6.10328E-09 | 8.21 |
| qSPP1-2 | chr01 | 22912149 | 23312149 | 1 | 23112149 | 2.94951E-08 | 7.53 |
| qSPP2 | chr02 | 29367905 | 29767905 | 1 | 29567905 | 1.76209E-07 | 6.75 |
| qSPP2-2 | chr02 | 33969898 | 34369898 | 1 | 34169898 | 1.67E-07 | 6.78 |
| qSPP2-3 | chr02 | 34881965 | 35281965 | 1 | 35081965 | 4.05E-08 | 7.39 |
| qSPP3 | chr03 | 26962219 | 29222499 | 6 | 27162013 | 2.48849E-10 | 9.60 |
| qSPP4-1 | chr04 | 4637668 | 5049834 | 7 | 4665306 | 2.91789E-08 | 7.53 |
| qSPP4-2 | chr04 | 24016919 | 24110788 | 2 | 24110788 | 8.30198E-08 | 7.08 |
| qSPP4-3 | chr04 | 28528082 | 28802817 | 10 | 28802817 | 5.97359E-08 | 7.22 |
| qSPP4-4 | chr04 | 31669472 | 32419124 | 11 | 32364511 | 9.61025E-09 | 8.02 |
| qSPP5 | chr05 | 1001696 | 1401696 | 1 | 1201696 | 4.10529E-09 | 8.39 |
| qSPP6 | chr06 | 6130020 | 6976459 | 12 | 6216099 | 3.46819E-11 | 10.46 |
| qSPP7-1 | chr07 | 3822326 | 9313461 | 12 | 4982558 | 1.01959E-08 | 7.99 |
| qSPP7-2 | chr07 | 15881250 | 16793836 | 2 | 16793836 | 8.18554E-08 | 7.09 |
| qSPP8 | chr08 | 25464215 | 25864215 | 1 | 25664215 | 8.92432E-08 | 7.05 |
| qSPP9 | chr09 | 12009098 | 12409098 | 1 | 12209098 | 1.52E-07 | 6.82 |
| qSPP10 | chr10 | 942713 | 1342713 | 1 | 1142713 | 7.10587E-08 | 7.15 |
| qSPP12 | chr12 | 551421 | 2995295 | 8 | 620783 | 2.09144E-10 | 9.68 |
Manhattan Plot of Spikelets per Panicle
QQ Plot of Spikelets per Panicle